PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000372.1_g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 372aa    MW: 42625.2 Da    PI: 8.7233
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000372.1_g00009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65e-066486123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             y+C+ C++sF r  nL+ H r+H
  Itr_sc000372.1_g00009.1 64 YVCETCNMSFHREQNLQMHRRRH 86
                             9*********************9 PP

2zf-C2H2171.7e-05152174123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C +Cgk +   s++k H++t+
  Itr_sc000372.1_g00009.1 152 WVCDKCGKAYAVLSDYKAHLKTC 174
                              58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.88E-66386No hitNo description
PROSITE profilePS5015711.0116486IPR007087Zinc finger, C2H2
SMARTSM003550.00426486IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-46486IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
SMARTSM0035585116146IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.4E-4143173IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.88E-6147172No hitNo description
SMARTSM0035549152179IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MLPNHSIYLS SSSSSSSPRL NFFSQEISHG CTTTKRKRKP AGTPDPNAQV IYLSPEKLLE  60
SDRYVCETCN MSFHREQNLQ MHRRRHKVPW QPQKAAARST GEGCSPPQEA ARKRVYVCPE  120
PSCVHHDPSH ALGDLVGIKK HFRRKHCDHK EWVCDKCGKA YAVLSDYKAH LKTCGTKGHS  180
CDCGRVFSRV ETFIEHQDSC KPKSFRRERE TPSKSAINLN LMSIEPRIHR TTADFHQYGN  240
NNNNMMIINS FSHHHNHHQK LEELELFPPS NSSKSAMIED EEDASLEALR LKFEAEEMMK  300
VARENKAMAE ERRKEAKYLI EMANQEMAKA RRIREQVWLA DLTTSHLLTD HCSTSSSSSA  360
QIRCNSCAKH LQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009787306.11e-118PREDICTED: protein SHOOT GRAVITROPISM 5-like isoform X1
SwissprotQ9C9X72e-96IDD14_ARATH; Protein indeterminate-domain 14
TrEMBLK4C2821e-110K4C282_SOLLC; Uncharacterized protein
STRINGSolyc05g054030.2.11e-109(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10222482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.13e-92indeterminate(ID)-domain 14